Creating Bespoke Force-Field Parameters
=========================================

| Zeke A. Piskulich\ :sup:`1`, Patricio Barletta\ :sup:`1`,  and Darrin M.
  York\ :sup:`1`
| :sup:`1`\ Laboratory for Biomolecular Simulation Research, Institute
  for Quantitative Biomedicine and Department of Chemistry and Chemical
  Biology, Rutgers University, Piscataway, NJ 08854, USA

Learning objectives
-------------------
.. include:: ../../ModularTutorials/ForceField/parameterization_with_LigandParam/tutorial.rst
    :start-after: .. start-learning-objectives
    :end-before: .. end-learning-objectives

.. include:: ../../ModularTutorials/ForceField/bespoke_dihedrals_with_FFPOPT/tutorial.rst
    :start-after: .. start-learning-objectives
    :end-before: .. end-learning-objectives

Relevant literature
-------------------

Outline
-------

In this tutorial, we will be using the python package LigandParam, developed by the York Group, to parameterize a ligand for use in molecular dynamics simulations. For this tutorial,
we will be parameterizing the ligand...

Tutorial
--------


.. include:: ../../ModularTutorials/ForceField/parameterization_with_LigandParam/tutorial.rst
    :start-after: .. start-tutorial
    :end-before: .. end-tutorial


.. include:: ../../ModularTutorials/ForceField/bespoke_dihedrals_with_FFPOPT/tutorial.rst
    :start-after: .. start-tutorial
    :end-before: .. end-tutorial