Hands-On Session 1: Use VMD and CPPTRAJ to visualize and analyze AMBER simulations
==================================================================================

| Lauren Lerew\ :sup:`1`, Solen Ekesan\ :sup:`1`, and Darrin M. York\ :sup:`1`
| :sup:`1`\ Laboratory for Biomolecular Simulation Research, Institute
  for Quantitative Biomedicine and Department of Chemistry and Chemical
  Biology, Rutgers University, Piscataway, NJ 08854, USA

Learning Objectives 
------------------- 

.. include:: /ModularTutorials/MISC/introduction_to_VMD/tutorial.rst
    :start-after: .. start-learning-objectives
    :end-before: .. end-learning-objectives

.. include:: /ModularTutorials/MISC/introduction_to_CPPTRAJ/tutorial.rst
    :start-after: .. start-learning-objectives
    :end-before: .. end-learning-objectives


Relevant literature
-------------------


Tutorial
--------

.. contents::
   :local:
   :depth: 4

.. include:: /ModularTutorials/MISC/introduction_to_VMD/tutorial.rst
    :start-after: .. start-tutorial
    :end-before: .. end-tutorial


.. include:: /ModularTutorials/MISC/introduction_to_CPPTRAJ/tutorial.rst
    :start-after: .. start-tutorial
    :end-before: .. end-tutorial