Welcome to the York Group’s Amber Workshop Activities!

Getting Started

Welcome to the York Group’s Amber Workshop Activities!

Here you will find a collection of activities and guides designed to help you understand and utilize Amber to do state-of-the-art free energy and machine learning calculations.

Currently, we have Four main sections of activities:

  1. Modular Activities: These activities are designed to be modular and reusable, allowing you to mix and match different sections to create a activity that fits your needs. They are also designed to be easily updated as new methods and techniques become available.

  2. Workshop Activities: These activities are designed to be self-contained, allowing you to follow along independently. Currently, these include materials for the 2024 and 2026 Amber Free Energy Workshops.

  3. Internal Guides: These guides contain internal information and sample templates for creating new activities.

  4. In Progress Activities: These activities are currently being developed and refined, and are likely not what you want to be using to learn. However, if you are interested in seeing what is coming soon, feel free to explore these in-progress activities.

Contents

Example Command Changes

You should see that these change when you change the drop down in the upper lefthand corner.

{{HOST}}

$ ssh user@..example..[this is plain text, normal code block]
# but for a host placeholder:
host: {{HOST}}
test: {{GAUSSIAN_LOAD}}

Note

Running on {{HOST}}