ForceField Tutorials
Force Field Parameterization (Non-Standard Parameters)
- Ligand Parameterization Terminology
- Ligand Parameterization Basics
- Using LigandParam to Parameterize Ligands
- FFPOPT Quick Start Guide - Installation
- Linear Dihedral Scans with FFPOPT
- Dihedral Scans using the WaveFront Method
- Developing Custom Dihedral Parameters with FFPOPT
- Divalent metal ion 12-6-4 models with Panteva–Giambasu–York (PGY) pairwise corrections for balanced interactions with nucleic acids