Miscellaneous

Miscellaneous Activities

• VMD Basics for Visualization
  • Learning Objectives
  • Activities
    • VMD
    • Install on your Local Computer:
    • Open VMD
    • Customizing Representations
    • Measuring Geometrical Properties
    • Selections with within and same
    • Trajectory Analysis
    • Image Rendering
    • Loading Multiple PDBs
    • Hydrogen Bonding
• CPPTRAJ for Analysis
  • Learning Objectives
  • Activities
    • Introduction to CPPTRAJ
    • Wrapping Trajectories
• AMBER and Molecular Simulation File Formats
  • Overview Table
  • Notes on Usage